Projects per year
Organization profile
Organization profile
The Structural Analysis of Biomedical Ontologies Center (SABOC) is an interdisciplinary research center linking computer science and medicine. It deals with medical terminologies and ontologies, a subject of study that is a sub-field of Medical Informatics. Many biomedical terminologies are measured in the tens of thousands to hundreds of thousands of terms, including drug names and their chemical ingredients, symptoms, diagnoses, body parts, medical procedures, medical devices, infectious agents and accidents, among others. Understanding these terms and finding inconsistencies with textual representations is difficult, and we therefore use graphical representations: biomedical terminologies appear as networks in which the terms are symbolized as boxes and the relationships between pairs of terms are symbolized as arrows. Without a sophisticated approach, visualizing these networks on a computer screen can lead to failure. The core research efforts of SABOC are to develop small abstraction networks that summarize large biomedical terminologies; to visualize abstraction networks on a computer screen in a manner that is easier to comprehend than the original terminologies; and to perform quality assurance on the original terminologies by using the abstraction networks to find and remove inconsistencies. As biomedical terminologies are increasingly used in applications such as electronic health records, ensuring that terminologies are free of inconsistencies helps ensure the correctness of these applications. SABOC is currently funded by a three-year, $1.75 million grant from the National Institutes of Health.
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Collaborations and top research areas from the last five years
Profiles
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James Geller
- Structural Analysis of Biomedical Ontologies Center - Professor
- Data Science - Professor
Person
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Yehoshua Perl
- Computer Science - Professor
- Structural Analysis of Biomedical Ontologies Center - Director
Person
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Applying Student Knowledge for Success in Cybersecurity and Data Science
Geller, J. (PI)
10/15/21 → 9/30/27
Project: Research project
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Applying Student Knowledge for Success in Cybersecurity and Data Science
Geller, J. (PI)
10/15/21 → 9/30/27
Project: Research project
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Taxonomies Supporting Orientation, Navigation and Auditing of Terminologies
Perl, Y. (PI)
U.S. National Library of Medicine
9/1/07 → 8/31/11
Project: Research project
Research output
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Convergence to Steady State in LLM-Generated Ontological Concepts
Khatwani, N., Wang, L., Klein, S. T. & Geller, J., May 21 2026, Opening the Personal Gate between Technology and Health Care - Proceedings of MIE 2026. Hagglund, M., Lindskold, L., Lhotska, L., Marceglia, S., Parimbelli, E., Sacchi, L., Soda, P., Stoicu-Tivadar, L., Veltri, P., Vizza, P., Giacomini, M., Delgado, J., Arvanitis, T. N., Andrikopoulou, E., Benis, A., Balestra, G., Bellazzi, R., Gallos, P. G., Gatta, R., Giacobbe, D. R. & Giordano, N. (eds.). IOS Press BV, p. 2279-2283 5 p. (Studies in Health Technology and Informatics; vol. 336).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access -
Evaluating the Impact of Highlighting and Multi-Step Prompting on Discharge Note Simplification Using In-Context Learning
Koohi Habibi Dehkordi, M., Chen, S., Zaidenberg, A., Elhanan, G., Deek, F. P. & Perl, Y., Jun 2026, In: Big Data and Cognitive Computing. 10, 6, 189.Research output: Contribution to journal › Article › peer-review
Open Access -
Fine-Tuning LLaMA2 for Summarizing Discharge Notes: Evaluating the Role of Highlighted Information
Koohi Habibi Dehkordi, M., Perl, Y., Deek, F. P. & Liu, H., Jan 2026, In: Big Data and Cognitive Computing. 10, 1, 4.Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Scopus citations
Press/Media
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New Findings from Kean University in the Area of Environmental Health Reported (Evaluating RAG and Non-RAG Pipelines for Concept Discovery in Environmental Health Ontologies)
6/26/26
1 item of Media coverage
Press/Media: Press / Media
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Data on Big Data and Cognitive Computing Discussed by Researchers at New Jersey Institute of Technology (Fine-Tuning LLaMA2 for Summarizing Discharge Notes: Evaluating the Role of Highlighted Information)
2/10/26
1 item of Media coverage
Press/Media: Press / Media