Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED

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Abstract

An algorithmically-derived abstraction network, called the partial-area taxonomy, for a SNOMED hierarchy has led to the identification of concepts considered complex. The designation " complex" is arrived at automatically on the basis of structural analyses of overlap among the constituent concept groups of the partial-area taxonomy. Such complex concepts, called overlapping concepts, constitute a tangled portion of a hierarchy and can be obstacles to users trying to gain an understanding of the hierarchy's content. A new methodology for partitioning the entire collection of overlapping concepts into singly-rooted groups, that are more manageable to work with and comprehend, is presented. Different kinds of overlapping concepts with varying degrees of complexity are identified. This leads to an abstract model of the overlapping concepts called the disjoint partial-area taxonomy, which serves as a vehicle for enhanced, high-level display. The methodology is demonstrated with an application to SNOMED's Specimen hierarchy. Overall, the resulting disjoint partial-area taxonomy offers a refined view of the hierarchy's structural organization and conceptual content that can aid users, such as maintenance personnel, working with SNOMED. The utility of the disjoint partial-area taxonomy as the basis for a SNOMED auditing regimen is presented in a companion paper.

Original languageEnglish (US)
Pages (from-to)15-29
Number of pages15
JournalJournal of Biomedical Informatics
Volume45
Issue number1
DOIs
StatePublished - Feb 2012

All Science Journal Classification (ASJC) codes

  • Computer Science Applications
  • Health Informatics

Keywords

  • Abstraction network
  • Modeling
  • Partitioning
  • SNOMED
  • Taxonomy
  • Terminology

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