An open benchmark suite for evaluating computer architecture on bioinformatics and life science applications

David A. Bader; Vipin Sachdeva

An open benchmark suite for evaluating computer architecture on bioinformatics and life science applications

Research output: Contribution to conference › Paper › peer-review

Abstract

In this paper, we propose BIOPERF, a definitive benchmark suite of representative applications from the biology and life sciences community, where the codes are carefully selected to span a breadth of algorithms and performance characteristics. The BIOPERF suite is available from www.bioperf. org and includes benchmark source code, input datasets of various sizes, and information for compiling and using the benchmarks. We include parallel codes where available.

Original language	English (US)
State	Published - 2006
Externally published	Yes
Event	SPEC Benchmark Workshop 2006 - Austin, TX, United States Duration: Jan 23 2006 → Jan 23 2006

Conference

Conference	SPEC Benchmark Workshop 2006
Country/Territory	United States
City	Austin, TX
Period	1/23/06 → 1/23/06

All Science Journal Classification (ASJC) codes

Safety, Risk, Reliability and Quality

Cite this

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title = "An open benchmark suite for evaluating computer architecture on bioinformatics and life science applications",

abstract = "In this paper, we propose BIOPERF, a definitive benchmark suite of representative applications from the biology and life sciences community, where the codes are carefully selected to span a breadth of algorithms and performance characteristics. The BIOPERF suite is available from www.bioperf. org and includes benchmark source code, input datasets of various sizes, and information for compiling and using the benchmarks. We include parallel codes where available.",

author = "Bader, {David A.} and Vipin Sachdeva",

year = "2006",

language = "English (US)",

note = "SPEC Benchmark Workshop 2006 ; Conference date: 23-01-2006 Through 23-01-2006",

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TY - CONF

T1 - An open benchmark suite for evaluating computer architecture on bioinformatics and life science applications

AU - Bader, David A.

AU - Sachdeva, Vipin

PY - 2006

Y1 - 2006

N2 - In this paper, we propose BIOPERF, a definitive benchmark suite of representative applications from the biology and life sciences community, where the codes are carefully selected to span a breadth of algorithms and performance characteristics. The BIOPERF suite is available from www.bioperf. org and includes benchmark source code, input datasets of various sizes, and information for compiling and using the benchmarks. We include parallel codes where available.

AB - In this paper, we propose BIOPERF, a definitive benchmark suite of representative applications from the biology and life sciences community, where the codes are carefully selected to span a breadth of algorithms and performance characteristics. The BIOPERF suite is available from www.bioperf. org and includes benchmark source code, input datasets of various sizes, and information for compiling and using the benchmarks. We include parallel codes where available.

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M3 - Paper

AN - SCOPUS:84883325186

T2 - SPEC Benchmark Workshop 2006

Y2 - 23 January 2006 through 23 January 2006

ER -

An open benchmark suite for evaluating computer architecture on bioinformatics and life science applications

Abstract

Conference

All Science Journal Classification (ASJC) codes

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