Analyzing protein surface for classification: A geometric hashing approach

Xiong Wang; Jason T.L. Wang

Analyzing protein surface for classification: A geometric hashing approach

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

In this paper, we present a surface extracting algorithm that finds the surface of a set of points in 3D Euclidean space. We apply the algorithm to extract the surfaces from proteins and discover patterns from these surface structures, using the pattern discovery algorithm we developed earlier. We then use these patterns to classify the proteins. Experimental results show the good performance of the proposed approach.

Original language	English (US)
Title of host publication	Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001
Editors	C.H. Wu, P.P. Wang, J.T.L. Wang
Pages	31-34
Number of pages	4
State	Published - 2001
Externally published	Yes
Event	Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, GBGIST 2001 - Durham, NC, United States Duration: Mar 15 2001 → Mar 17 2001

Publication series

Name	Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001

Other

Other	Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, GBGIST 2001
Country/Territory	United States
City	Durham, NC
Period	3/15/01 → 3/17/01

All Science Journal Classification (ASJC) codes

Agricultural and Biological Sciences (miscellaneous)
Genetics
Computer Science (miscellaneous)

Cite this

Wang, X., & Wang, J. T. L. (2001). Analyzing protein surface for classification: A geometric hashing approach. In C. H. Wu, P. P. Wang, & J. T. L. Wang (Eds.), Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001 (pp. 31-34). (Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001).

Wang, Xiong ; Wang, Jason T.L. / Analyzing protein surface for classification : A geometric hashing approach. Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001. editor / C.H. Wu ; P.P. Wang ; J.T.L. Wang. 2001. pp. 31-34 (Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001).

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title = "Analyzing protein surface for classification: A geometric hashing approach",

abstract = "In this paper, we present a surface extracting algorithm that finds the surface of a set of points in 3D Euclidean space. We apply the algorithm to extract the surfaces from proteins and discover patterns from these surface structures, using the pattern discovery algorithm we developed earlier. We then use these patterns to classify the proteins. Experimental results show the good performance of the proposed approach.",

author = "Xiong Wang and Wang, {Jason T.L.}",

year = "2001",

language = "English (US)",

isbn = "0970789009",

series = "Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001",

pages = "31--34",

editor = "C.H. Wu and P.P. Wang and J.T.L. Wang",

booktitle = "Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001",

note = "Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, GBGIST 2001 ; Conference date: 15-03-2001 Through 17-03-2001",

}

Wang, X & Wang, JTL 2001, Analyzing protein surface for classification: A geometric hashing approach. in CH Wu, PP Wang & JTL Wang (eds), Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001. Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001, pp. 31-34, Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, GBGIST 2001, Durham, NC, United States, 3/15/01.

Analyzing protein surface for classification: A geometric hashing approach. / Wang, Xiong; Wang, Jason T.L.
Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001. ed. / C.H. Wu; P.P. Wang; J.T.L. Wang. 2001. p. 31-34 (Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

TY - GEN

T1 - Analyzing protein surface for classification

T2 - Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, GBGIST 2001

AU - Wang, Xiong

AU - Wang, Jason T.L.

PY - 2001

Y1 - 2001

N2 - In this paper, we present a surface extracting algorithm that finds the surface of a set of points in 3D Euclidean space. We apply the algorithm to extract the surfaces from proteins and discover patterns from these surface structures, using the pattern discovery algorithm we developed earlier. We then use these patterns to classify the proteins. Experimental results show the good performance of the proposed approach.

AB - In this paper, we present a surface extracting algorithm that finds the surface of a set of points in 3D Euclidean space. We apply the algorithm to extract the surfaces from proteins and discover patterns from these surface structures, using the pattern discovery algorithm we developed earlier. We then use these patterns to classify the proteins. Experimental results show the good performance of the proposed approach.

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M3 - Conference contribution

AN - SCOPUS:1842453365

SN - 0970789009

T3 - Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001

SP - 31

EP - 34

BT - Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001

A2 - Wu, C.H.

A2 - Wang, P.P.

A2 - Wang, J.T.L.

Y2 - 15 March 2001 through 17 March 2001

ER -

Wang X, Wang JTL. Analyzing protein surface for classification: A geometric hashing approach. In Wu CH, Wang PP, Wang JTL, editors, Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001. 2001. p. 31-34. (Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001).

Analyzing protein surface for classification: A geometric hashing approach

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All Science Journal Classification (ASJC) codes

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