@inproceedings{84a1fb9eb5b5448c97c2fcbe9795164b,
title = "High Performance Adaptive Physics Refinement to Enable Large-Scale Tracking of Cancer Cell Trajectory",
abstract = "The ability to track simulated cancer cells through the circulatory system, important for developing a mechanistic understanding of metastatic spread, pushes the limits of today's supercomputers by requiring the simulation of large fluid volumes at cellular-scale resolution. To overcome this challenge, we introduce a new adaptive physics refinement (APR) method that captures cellular-scale interaction across large domains and leverages a hybrid CPU-GPU approach to maximize performance. Through algorithmic advances that integrate multi-physics and multi-resolution models, we establish a finely resolved window with explicitly modeled cells coupled to a coarsely resolved bulk fluid domain. In this work we present multiple validations of the APR framework by comparing against fully resolved fluid-structure interaction methods and employ techniques, such as latency hiding and maximizing memory bandwidth, to effectively utilize heterogeneous node architectures. Collectively, these computational developments and performance optimizations provide a robust and scalable framework to enable system-level simulations of cancer cell transport.",
keywords = "cancer metastasis, deformable cells, heterogeneous architectures, immersed boundary, multiphysics",
author = "Puleri, {Daniel F.} and Sayan Roychowdhury and Peter Balogh and John Gounley and Draeger, {Erik W.} and Jeff Ames and Adebayo Adebiyi and Simbarashe Chidyagwai and Benjamin Hernandez and Seyong Lee and Moore, {Shirley V.} and Vetter, {Jeffrey S.} and Amanda Randles",
note = "Publisher Copyright: {\textcopyright} 2022 IEEE.; 2022 IEEE International Conference on Cluster Computing, CLUSTER 2022 ; Conference date: 06-09-2022 Through 09-09-2022",
year = "2022",
doi = "10.1109/CLUSTER51413.2022.00036",
language = "English (US)",
series = "Proceedings - IEEE International Conference on Cluster Computing, ICCC",
publisher = "Institute of Electrical and Electronics Engineers Inc.",
pages = "230--242",
booktitle = "Proceedings - 2022 IEEE International Conference on Cluster Computing, CLUSTER 2022",
address = "United States",
}