High Performance Adaptive Physics Refinement to Enable Large-Scale Tracking of Cancer Cell Trajectory

  • Daniel F. Puleri
  • , Sayan Roychowdhury
  • , Peter Balogh
  • , John Gounley
  • , Erik W. Draeger
  • , Jeff Ames
  • , Adebayo Adebiyi
  • , Simbarashe Chidyagwai
  • , Benjamin Hernandez
  • , Seyong Lee
  • , Shirley V. Moore
  • , Jeffrey S. Vetter
  • , Amanda Randles

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

The ability to track simulated cancer cells through the circulatory system, important for developing a mechanistic understanding of metastatic spread, pushes the limits of today's supercomputers by requiring the simulation of large fluid volumes at cellular-scale resolution. To overcome this challenge, we introduce a new adaptive physics refinement (APR) method that captures cellular-scale interaction across large domains and leverages a hybrid CPU-GPU approach to maximize performance. Through algorithmic advances that integrate multi-physics and multi-resolution models, we establish a finely resolved window with explicitly modeled cells coupled to a coarsely resolved bulk fluid domain. In this work we present multiple validations of the APR framework by comparing against fully resolved fluid-structure interaction methods and employ techniques, such as latency hiding and maximizing memory bandwidth, to effectively utilize heterogeneous node architectures. Collectively, these computational developments and performance optimizations provide a robust and scalable framework to enable system-level simulations of cancer cell transport.

Original languageEnglish (US)
Title of host publicationProceedings - 2022 IEEE International Conference on Cluster Computing, CLUSTER 2022
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages230-242
Number of pages13
ISBN (Electronic)9781665498562
DOIs
StatePublished - 2022
Event2022 IEEE International Conference on Cluster Computing, CLUSTER 2022 - Heidelberg, Germany
Duration: Sep 6 2022Sep 9 2022

Publication series

NameProceedings - IEEE International Conference on Cluster Computing, ICCC
Volume2022-September
ISSN (Print)1552-5244

Conference

Conference2022 IEEE International Conference on Cluster Computing, CLUSTER 2022
Country/TerritoryGermany
CityHeidelberg
Period9/6/229/9/22

All Science Journal Classification (ASJC) codes

  • Software
  • Hardware and Architecture
  • Signal Processing

Keywords

  • cancer metastasis
  • deformable cells
  • heterogeneous architectures
  • immersed boundary
  • multiphysics

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