Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system

David A. Bader; Vipin Sachdeva

doi:10.1109/CSBW.2005.77

Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system

David A. Bader, Vipin Sachdeva

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2 Scopus citations

Abstract

Advances in experimental techniques have transformed biology into a data-intensive science, with a rapid explosion of data at the genomic and proteomic level. Few comprehensive suites of computationally-intensive life science applications are available to the computer science community for optimization of current high-performance architectures specifically targeted towards the computational biology applications. BioSplash represents a wide variety of opensource codes spanning the heterogeneity of algorithms, biological problems, popularity among biologists, and memory traits, gearing the suite to be of importance to both biologists and computer scientists.

Original language	English (US)
Title of host publication	2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts
Pages	83-84
Number of pages	2
DOIs	https://doi.org/10.1109/CSBW.2005.77
State	Published - 2005
Externally published	Yes
Event	2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts - Stanford, CA, United States Duration: Aug 8 2005 → Aug 11 2005

Publication series

Name	2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts

Conference

Conference	2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts
Country/Territory	United States
City	Stanford, CA
Period	8/8/05 → 8/11/05

All Science Journal Classification (ASJC) codes

General Engineering

Access to Document

10.1109/CSBW.2005.77

Cite this

Bader, D. A., & Sachdeva, V. (2005). Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. In 2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts (pp. 83-84). Article 1540550 (2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts). https://doi.org/10.1109/CSBW.2005.77

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title = "Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system",

abstract = "Advances in experimental techniques have transformed biology into a data-intensive science, with a rapid explosion of data at the genomic and proteomic level. Few comprehensive suites of computationally-intensive life science applications are available to the computer science community for optimization of current high-performance architectures specifically targeted towards the computational biology applications. BioSplash represents a wide variety of opensource codes spanning the heterogeneity of algorithms, biological problems, popularity among biologists, and memory traits, gearing the suite to be of importance to both biologists and computer scientists.",

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year = "2005",

doi = "10.1109/CSBW.2005.77",

language = "English (US)",

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series = "2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts",

pages = "83--84",

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note = "2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts ; Conference date: 08-08-2005 Through 11-08-2005",

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Bader, DA & Sachdeva, V 2005, Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. in 2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts., 1540550, 2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts, pp. 83-84, 2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts, Stanford, CA, United States, 8/8/05. https://doi.org/10.1109/CSBW.2005.77

Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. / Bader, David A.; Sachdeva, Vipin.
2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts. 2005. p. 83-84 1540550 (2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

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AB - Advances in experimental techniques have transformed biology into a data-intensive science, with a rapid explosion of data at the genomic and proteomic level. Few comprehensive suites of computationally-intensive life science applications are available to the computer science community for optimization of current high-performance architectures specifically targeted towards the computational biology applications. BioSplash represents a wide variety of opensource codes spanning the heterogeneity of algorithms, biological problems, popularity among biologists, and memory traits, gearing the suite to be of importance to both biologists and computer scientists.

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BT - 2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts

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Bader DA, Sachdeva V. Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. In 2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts. 2005. p. 83-84. 1540550. (2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts). doi: 10.1109/CSBW.2005.77

Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system

Abstract

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Conference

All Science Journal Classification (ASJC) codes

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