RADAR: An interactive web-based toolkit for RNA data analysis and research

Mugdha Khaladkar; Vivian Bellofatto; Jason Wang; Bin Tian; Kaizhong Zhang

doi:10.1109/BIBE.2006.253336

RADAR: An interactive web-based toolkit for RNA data analysis and research

Mugdha Khaladkar, Vivian Bellofatto, Jason Wang, Bin Tian, Kaizhong Zhang

Computer Science

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

3 Scopus citations

Abstract

In this paper we present RADAR, a web-based toolkit for RNA data analysis and research. The toolkit is capable of performing database search, multiple structure alignment, and pairwise structure comparison. In addition, RADAR provides two salient features: (1) constrained alignment of RNA secondary structures, and (2) prediction of the consensus for a set of RNA secondary structures. RADAR assists scientists in performing many important RNA mining operations, including understanding the functionality of RNA sequences, the detection of structural RNA motifs and the clustering of RNA molecules, among others. The toolkit is fully operational and accessible on the Web at http://datalab.njit.edu/biodata/rna/RSmatch/server.htm.

Original language	English (US)
Title of host publication	Proceedings - Sixth IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006
Pages	209-212
Number of pages	4
DOIs	https://doi.org/10.1109/BIBE.2006.253336
State	Published - Dec 1 2006
Event	6th IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006 - Arlington, VA, United States Duration: Oct 16 2006 → Oct 18 2006

Other

Other	6th IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006
Country/Territory	United States
City	Arlington, VA
Period	10/16/06 → 10/18/06

All Science Journal Classification (ASJC) codes

Biotechnology
Computer Science Applications
Information Systems

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10.1109/BIBE.2006.253336

Cite this

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title = "RADAR: An interactive web-based toolkit for RNA data analysis and research",

abstract = "In this paper we present RADAR, a web-based toolkit for RNA data analysis and research. The toolkit is capable of performing database search, multiple structure alignment, and pairwise structure comparison. In addition, RADAR provides two salient features: (1) constrained alignment of RNA secondary structures, and (2) prediction of the consensus for a set of RNA secondary structures. RADAR assists scientists in performing many important RNA mining operations, including understanding the functionality of RNA sequences, the detection of structural RNA motifs and the clustering of RNA molecules, among others. The toolkit is fully operational and accessible on the Web at http://datalab.njit.edu/biodata/rna/RSmatch/server.htm.",

author = "Mugdha Khaladkar and Vivian Bellofatto and Jason Wang and Bin Tian and Kaizhong Zhang",

year = "2006",

month = dec,

day = "1",

doi = "10.1109/BIBE.2006.253336",

language = "English (US)",

isbn = "0769527272",

pages = "209--212",

booktitle = "Proceedings - Sixth IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006",

note = "6th IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006 ; Conference date: 16-10-2006 Through 18-10-2006",

}

Khaladkar, M, Bellofatto, V, Wang, J, Tian, B & Zhang, K 2006, RADAR: An interactive web-based toolkit for RNA data analysis and research. in Proceedings - Sixth IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006., 4019661, pp. 209-212, 6th IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006, Arlington, VA, United States, 10/16/06. https://doi.org/10.1109/BIBE.2006.253336

TY - GEN

T1 - RADAR

T2 - 6th IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006

AU - Khaladkar, Mugdha

AU - Bellofatto, Vivian

AU - Wang, Jason

AU - Tian, Bin

AU - Zhang, Kaizhong

PY - 2006/12/1

Y1 - 2006/12/1

N2 - In this paper we present RADAR, a web-based toolkit for RNA data analysis and research. The toolkit is capable of performing database search, multiple structure alignment, and pairwise structure comparison. In addition, RADAR provides two salient features: (1) constrained alignment of RNA secondary structures, and (2) prediction of the consensus for a set of RNA secondary structures. RADAR assists scientists in performing many important RNA mining operations, including understanding the functionality of RNA sequences, the detection of structural RNA motifs and the clustering of RNA molecules, among others. The toolkit is fully operational and accessible on the Web at http://datalab.njit.edu/biodata/rna/RSmatch/server.htm.

AB - In this paper we present RADAR, a web-based toolkit for RNA data analysis and research. The toolkit is capable of performing database search, multiple structure alignment, and pairwise structure comparison. In addition, RADAR provides two salient features: (1) constrained alignment of RNA secondary structures, and (2) prediction of the consensus for a set of RNA secondary structures. RADAR assists scientists in performing many important RNA mining operations, including understanding the functionality of RNA sequences, the detection of structural RNA motifs and the clustering of RNA molecules, among others. The toolkit is fully operational and accessible on the Web at http://datalab.njit.edu/biodata/rna/RSmatch/server.htm.

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U2 - 10.1109/BIBE.2006.253336

DO - 10.1109/BIBE.2006.253336

M3 - Conference contribution

AN - SCOPUS:34547418999

SN - 0769527272

SN - 9780769527277

SP - 209

EP - 212

BT - Proceedings - Sixth IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006

Y2 - 16 October 2006 through 18 October 2006

ER -

RADAR: An interactive web-based toolkit for RNA data analysis and research

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