RADAR: An interactive web-based toolkit for RNA data analysis and research

Mugdha Khaladkar, Vivian Bellofatto, Jason Wang, Bin Tian, Kaizhong Zhang

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Abstract

In this paper we present RADAR, a web-based toolkit for RNA data analysis and research. The toolkit is capable of performing database search, multiple structure alignment, and pairwise structure comparison. In addition, RADAR provides two salient features: (1) constrained alignment of RNA secondary structures, and (2) prediction of the consensus for a set of RNA secondary structures. RADAR assists scientists in performing many important RNA mining operations, including understanding the functionality of RNA sequences, the detection of structural RNA motifs and the clustering of RNA molecules, among others. The toolkit is fully operational and accessible on the Web at http://datalab.njit.edu/biodata/rna/RSmatch/server.htm.

Original languageEnglish (US)
Title of host publicationProceedings - Sixth IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006
Pages209-212
Number of pages4
DOIs
StatePublished - Dec 1 2006
Event6th IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006 - Arlington, VA, United States
Duration: Oct 16 2006Oct 18 2006

Other

Other6th IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006
CountryUnited States
CityArlington, VA
Period10/16/0610/18/06

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Computer Science Applications
  • Information Systems

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