Abstract
In this paper we present RADAR, a web-based toolkit for RNA data analysis and research. The toolkit is capable of performing database search, multiple structure alignment, and pairwise structure comparison. In addition, RADAR provides two salient features: (1) constrained alignment of RNA secondary structures, and (2) prediction of the consensus for a set of RNA secondary structures. RADAR assists scientists in performing many important RNA mining operations, including understanding the functionality of RNA sequences, the detection of structural RNA motifs and the clustering of RNA molecules, among others. The toolkit is fully operational and accessible on the Web at http://datalab.njit.edu/biodata/rna/RSmatch/server.htm.
Original language | English (US) |
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Title of host publication | Proceedings - Sixth IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006 |
Pages | 209-212 |
Number of pages | 4 |
DOIs | |
State | Published - Dec 1 2006 |
Event | 6th IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006 - Arlington, VA, United States Duration: Oct 16 2006 → Oct 18 2006 |
Other
Other | 6th IEEE Symposium on BioInformatics and BioEngineering, BIBE 2006 |
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Country/Territory | United States |
City | Arlington, VA |
Period | 10/16/06 → 10/18/06 |
All Science Journal Classification (ASJC) codes
- Biotechnology
- Computer Science Applications
- Information Systems