TY - JOUR
T1 - Robustness and limitations of maximum entropy in plant community assembly
AU - Gerkema, Jelyn
AU - Bunker, Daniel E.
AU - Cunliffe, Andrew M.
AU - Bazzato, Erika
AU - Marignani, Michela
AU - Sitzia, Tommaso
AU - Aubin, Isabelle
AU - Chelli, Stefano
AU - Rosell, Julieta A.
AU - Poschlod, Peter
AU - Penuelas, Josep
AU - Dias, Arildo S.
AU - Rossi, Christian
AU - Shovon, Tanvir A.
AU - Campos, Juan A.
AU - Vanderwel, Mark C.
AU - Mukul, Sharif A.
AU - Cerabolini, Bruno E.L.
AU - Sibret, Thomas
AU - Hérault, Bruno
AU - Schmitt, Sylvain
AU - Higuchi, Pedro
AU - Tsakalos, James L.
AU - Junaedi, Decky I.
AU - Zhao, Yun Peng
AU - Minden, Vanessa
AU - da Silva, Ana Carolina
AU - Mašková, Tereza
AU - Canullo, Roberto
AU - Dong, Ning
AU - Pos, Edwin T.
N1 - Publisher Copyright:
© 2025 The Authors
PY - 2025/5
Y1 - 2025/5
N2 - An in-depth understanding of local plant community assembly is critical to direct conservation efforts to promising areas and increase the efficiency of management strategies. This, however, remains elusive due to the sheer complexity of ecological processes. The maximum entropy-based Community Assembly via Trait Selection (CATS) model was designed to quantify the relative contributions of trait-based filtering, dispersal mass effects, and stochastic processes on community assembly. As a maximum entropy model, it does so without introducing additional bias or assumptions. Despite its increasing use, questions regarding its robustness and potential limitations remain. Here, we compared model predictions using either local or database-derived trait values, across different levels of species richness and between different taxonomic levels. A total of 19 datasets and 790 plots were analysed, spanning multiple habitat types (n = 18) and biomes (n = 7). Results indicate trait value origin does indeed influence model outcomes, warranting caution in selecting the method for obtaining trait data. We hypothesise that, for example, intraspecific trait variation combined with trait-based filtering or stochastic processes causes local and database trait values to deviate, potentially even further exacerbated by imputing missing trait data. Furthermore, trait-related information obtained from the model decreased with increasing species richness. We further hypothesise this could signal that stochastic processes are more dominant within species-rich systems, for example, due to functional redundancy or the existence of multiple fitness strategies. This general pattern was conserved across biomes, although with varying strength, showing CATS’ robustness despite these challenges.
AB - An in-depth understanding of local plant community assembly is critical to direct conservation efforts to promising areas and increase the efficiency of management strategies. This, however, remains elusive due to the sheer complexity of ecological processes. The maximum entropy-based Community Assembly via Trait Selection (CATS) model was designed to quantify the relative contributions of trait-based filtering, dispersal mass effects, and stochastic processes on community assembly. As a maximum entropy model, it does so without introducing additional bias or assumptions. Despite its increasing use, questions regarding its robustness and potential limitations remain. Here, we compared model predictions using either local or database-derived trait values, across different levels of species richness and between different taxonomic levels. A total of 19 datasets and 790 plots were analysed, spanning multiple habitat types (n = 18) and biomes (n = 7). Results indicate trait value origin does indeed influence model outcomes, warranting caution in selecting the method for obtaining trait data. We hypothesise that, for example, intraspecific trait variation combined with trait-based filtering or stochastic processes causes local and database trait values to deviate, potentially even further exacerbated by imputing missing trait data. Furthermore, trait-related information obtained from the model decreased with increasing species richness. We further hypothesise this could signal that stochastic processes are more dominant within species-rich systems, for example, due to functional redundancy or the existence of multiple fitness strategies. This general pattern was conserved across biomes, although with varying strength, showing CATS’ robustness despite these challenges.
KW - Community assembly
KW - Dispersal mass effects
KW - Maximum entropy
KW - Plant ecology
KW - Trait-based filtering
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U2 - 10.1016/j.ecoinf.2025.103031
DO - 10.1016/j.ecoinf.2025.103031
M3 - Article
AN - SCOPUS:85216829466
SN - 1574-9541
VL - 86
JO - Ecological Informatics
JF - Ecological Informatics
M1 - 103031
ER -