@inproceedings{12b9f4deddfe44f4ae6f84c1240541c3,
title = "Using aggregate taxonomies to summarize SNOMED CT evolution",
abstract = "Terminologies are typically large and complex knowledge systems. It is difficult to obtain an orientation into their structure and content. In previous research we designed compact summary networks called partial-area taxonomies to provide a structural summary of a terminology. The sizes of a terminology and of its partial-area taxonomy are defined as their numbers of nodes. While a partial-area taxonomy is typically smaller than the original terminology, it is often not compact enough to provide a clear {"}big picture,{"} due to too many nodes that summarize only a small number of terminology concepts. The display of such a partial-area taxonomy is still overwhelming. In this paper, we introduce a more compact summary of a terminology, called an aggregate taxonomy, obtained by aggregating small partial-area taxonomy nodes into larger nodes. We present a parametrized technique to study the design of such an aggregate taxonomy and apply it to the Specimen hierarchy of SNOMED CT. A software tool for creating and displaying aggregate taxonomies is described. We illustrate how aggregate taxonomies derived across multiple SNOMED CT releases can be used to summarize the evolution of the Specimen hierarchy's content over eight years of SNOMED CT releases.",
keywords = "Abstraction Network, Medical Terminology and Ontology, SNOMED CT, Summarization, Taxonomy, Terminology Abstraction, Visualization",
author = "Christopher Ochs and Yehoshua Perl and James Geller and Mark Musen",
note = "Publisher Copyright: {\textcopyright} 2015 IEEE.; IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015 ; Conference date: 09-11-2015 Through 12-11-2015",
year = "2015",
month = dec,
day = "16",
doi = "10.1109/BIBM.2015.7359822",
language = "English (US)",
series = "Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015",
publisher = "Institute of Electrical and Electronics Engineers Inc.",
pages = "1008--1015",
editor = "Schapranow, {lng. Matthieu} and Jiayu Zhou and Hu, {Xiaohua Tony} and Bin Ma and Sanguthevar Rajasekaran and Satoru Miyano and Illhoi Yoo and Brian Pierce and Amarda Shehu and Gombar, {Vijay K.} and Brian Chen and Vinay Pai and Jun Huan",
booktitle = "Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015",
address = "United States",
}